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以NF-κB为靶点的氮杂环化合物的三维定量构效分析

3D-QSAR Study of a Series of N Heterocyclic Compounds Target for Inhibiting NF-κB

【作者】 王文第

【导师】 王勤;

【作者基本信息】 兰州大学 , 生物物理, 2009, 硕士

【摘要】 喹唑啉类化合物是近年来备受研究人员关注的一类杂环化合物,且被发现其对NF-κB信号通路有抑制作用。在第一部分工作中,通过文献调研选取了一系列喹唑啉衍生物,这类化合物已被证明对NF-κB的活化有抑制作用,因此,基于这类化合物是以NF-κB为靶点发挥作用,实验中采用比较分子力场分析法(CoMFA)和比较分子相似性指数分析法(CoMSIA)对该系列化合物进行三维定量构效关系(3D-QSAR)研究,建立了3D-QSAR的CoMFA和CoMSIA模型。计算得到其交叉验证相关系数q2分别为0.823和0.795;非交叉验证相关系数R2分别为0.979和0.980;标准误SEE分别为0.149和0.144,表明该模型合理、可信,并具有良好的预测能力。构效关系分析表明:(1)取代基R3位(见表2.1,下同)引入大体积、正电性、氢键受体基团对提高化合物活性有利;(2)取代基R5、R6位应引入负电性基团、避免引入疏水性基团;而R6位引入氢键给体基团对化合物活性有利;(3)取代基R7位引入小体积基团有利于化合物活性的提高;(4)R4位取代基体积大小、电负性强弱对于化合物活性影响不大;(5)氢键给体基团不会明显降低化合物的生物活性。应用这些规律可指导喹唑啉类NF-κB抑制剂的设计与结构优化,为寻找理想的抗肿瘤化合物提供了重要的依据。咪唑并[1,2-a]吡啶由于其很好的抗癌活性被广泛应用于药物结构中,在第二部分工作中,对功能有机分子化学国家重点实验室合成的一系列新型咪唑并[1,2-a]吡啶衍生物(TIP)进行抗肿瘤活性研究。选取人宫颈癌细胞株HeLa及人急性单核白血病细胞株THP-1为受试细胞株,用不同浓度(0、40、80、160、320、640μM)的TIP类化合物对其进行处理,48 h后,测得细胞增殖活性明显改变,证明这一系列TIP化合物对HeLa及THP-1细胞的增殖有抑制作用,且这种增殖抑制呈浓度依赖关系。对于HeLa细胞株,TIP-06、14号化合物IC50分别达到了54.80及46.96μM,而TIP-08、13不具有明显的细胞毒活性;对于THP-1细胞株,TIP-02、06及08号化合物IC50分别达到了53.01、36.81、27.37μM,化合物TIP-10、14不具有明显的细胞毒活性;说明,HeLa与THP-1细胞株对于这系列TIP化合物的敏感度不同,受试细胞株对于这类化合物具有一定的选择性,而这种抑制选择性与化合物的结构有很大关系,关于这类化合物的构效关系研究会在得到更多的TIP衍生物后进行研究。

【Abstract】 It is recently proposed that quinazoline derivatives are capable of inhibiting the activation of NF-κB.To obtain some helpful information for designing functional inhibitor based on NF-κB target,3D-Quantitative Structure-Activity Relationship (3D-QSAR) studies such as Comparative Molecular Field Analysis(CoMFA) and Comparative Molecular Similarity Indices Analysis(CoMSIA) on 67 inhibitors, quinazoline derivatives,have been carried out.The CoMFA and CoMSIA models give a cross-validated coefficient q2 of 0.823 and 0.795,respectively,and the conventional correlation coefficient R2 of 0.979 and 0.980,respectively.The predictive abilities of the two models were further validated by a test set of 12 compounds.The models gave predicted correlation coefficient R2pred2 of 0.950 for CoMFA model and 0.979 for CoMSIA model.Based on the above results,we identified the key structural features that may help to design potent inhibitors with improved activities:(1) It can improve the compound activity to introduce the group considering big volume,lower electronegativity,hydrogen-bond acceptor properties in substituent R3 part;(2) It can improve the compound activity to introduce the group considering higher electronegativity,less hydrophobic,hydrogen-bond donor properties in substituent R6 part;and to introduce the group considering higher electronegativity,less hydrophobic properties in substituent R5 part;(3) It can improve the compound activity to introduce the group considering small volume property in substituent R7 part;(4) The steric and electrostatic effect in the substituent R4 is not important to the inhibitory activity;(5) The hydrogen-bond donor effect is not important to the inhibitory activity.The 3D contour maps of CoMFA and CoMSIA provided smooth and interpretable explanation of the structure-activity relation for the compounds,which will guide the design of novel compounds with relatively high inhibitory activity.In the second part of this dissertation,HeLa and THP-1 cells were treated with different concentrations(0,40,80,160,320,640μM) of TIP derivativesfor 48 h,TIP derivatives can inhhibit the proliferation of HeLa and THP-1 cells in a dose-dependent manner in vitro.TIP-06,14 generated the 54.80 and 46.96μM IC50 values in HeLa cells lines,TIP-08 and TIP-13 on HeLa cells did not have a signifigant effects.TIP-02,06 and 08 generated the 53.01,36.81 and 27.37μM IC50 values in THP-1 cells lines,TIP-10 and TIP-14 on THP-1 cells did not have a signifigant effects.The reasults in part two suggest that the sensitivity degree of HeLa andTHP-1 cell line is different with different compounds.

  • 【网络出版投稿人】 兰州大学
  • 【网络出版年期】2011年 S1期
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