【作者】 韩兆雪；

【导师】 余懋群；

【作者基本信息】 中国科学院研究生院（成都生物研究所） ， 植物学， 2007， 博士

【摘要】 高等植物种子胚乳贮藏蛋白是种子发芽时的主要氮源，也是人类和动物食用植物蛋白的主要来源。大麦种子胚乳贮藏蛋白主要是醇溶蛋白(hordeins)，占大麦胚乳总蛋白的50-60％。根据大麦醇溶蛋白的大小和组成特点，大麦醇溶蛋白被划分为三种类型：富硫蛋白亚类(B，γ-hordeins)、贫硫蛋白亚类(C-hordeins)以及高分子量蛋白亚类(D-hordeins)。B组和C组醇溶蛋白是大麦胚乳的两类主要贮藏蛋白，它们分别占大麦总醇溶蛋白成分的70-80％和10-12％。遗传分析表明，大麦B、C、D和γ-组醇溶蛋白分别是由位于大麦第五染色体1H(5)上的Hor2、Hor1、Hor3和Hor5位点编码。Hor2位点编码大量分子量相同但组成不同的B组醇溶蛋白(B-hordein)。B-hordein的种类、数量和分布是影响大麦酿造、食用及饲养品质的重要因素之一。为深入了解B-hordein基因家族的结构和染色体组织，探明Hor2位点基因表达的发育调控机制，最终达到改良禾谷类作物籽粒品质的目的，本研究以青藏高原青稞为材料，采用同源克隆法，分别克隆B-hordein基因和启动子，通过原核生物表达验证B-hordein基因功能，并利用实时定量PCR探索B-hordein基因表达时空关系，取得如下研究结果：1．以具有特殊B组醇溶蛋白亚基组成的9份青藏高原青稞为材料，根据GenBank中三个B-hordein基因序列(GenBank No.X03103，X53690和X53691)设计一对引物，通过PCR扩增，获得23个B-hordein基因克隆并对其进行了序列分析。核苷酸序列分析表明，所有克隆均包含完整的开放阅读框。有11个克隆都存在一个框内终止密码子，推测这11个克隆可能是假基因。推测的氨基酸序列分析表明，所有大麦B-hordein具有相似的蛋白质基本结构，均包括一个高度保守的信号肽、中间重复区以及C-端结构域。不同大麦种重复区内重复基元的数目有较大差异。青稞材料Z07-2和Z26的B-hordeins仅具有12个重复基元结构，更接近于野生大麦。这些重复基元数目的差异导致了重复区序列长度和结构的变异。这种现象极可能是由于醇溶谷蛋白基因在进化过程中染色体的不平衡交换或复制滑动所造成的。对所克隆基因和禾本科代表性醇溶谷蛋白基因进行聚类分析，结果表明所有来自栽培大麦的B-hordeins聚类成一个亚家族，来自野生大麦的B-hordeins以及普通小麦的LMW-GS聚类成另外一个亚家族，表明这两个亚家族的成员存在显著差异。此外，我们发现B-hordein基因推测的C-末端序列具有一些有规律的特征：即具有相同C-末端序列的B-hordein基因在系统发生树中聚类为同一个亚组(除BXQ053，BZ09-1，BZ26-5分别单独聚为一类外)。这个特征将有助于我们对所有B组醇溶蛋白基因家族成员进行分类，避免了在SDS-PAGE电泳图谱上仅依靠大小分类的局限性。2．根据上述克隆的青稞B-hordein基因的5’端序列设计三条基因特异的反向引物，以青稞Z09和Z26的基因组DNA为模板，采用SON-PCR和TAIL-PCR技术分离克隆出8个B-hordein基因的上游调控序列(命名为Z09P和Z26P)。序列分析表明，推测的TATA box位于-80 bp，CAAT-like box位于-140 bp处。此外，Z09P和Z26P中有六个序列在-300 bp处均存在一个由高度保守的EM基序和类GCN4基序构成的胚乳盒(Endosperm Box，EB)，在约-560 bp处存在一个胚乳盒类似结构。而Z09P-2和Z26P-3不存在保守的胚乳盒或其类似结构，预示着这两个启动子所调控的基因表达可能受不同类型反式作用因子的调节，推测该启动子对基因的表达调控具有多样性。3．将B-hordein基因的开放阅读框定向克隆到表达载体pET-30a中，将其导入大肠杆菌表达菌株BL21中进行外源基因的诱导表达以验证所克隆基因的功能。结果表明仅含重组子pET-BZ07-2和pET-BZ26-5的BL21细菌有目的表达蛋白产生。在诱导3h时的蛋白表达量最高；3 mM IPTG诱导的蛋白表达量要高于1 mM IPTG诱导的表达量。这为分离纯化B-hordein蛋白以及进一步研究其对大麦籽粒品质的影响奠定基础。4．根据从青稞Z09和Z26中分离克隆的B-hordein基因序列设计一对基因特异的引物，同时，选择大麦α-微管蛋白基因(GenBank no.U40042)为看家基因并设计特异引物，利用实时荧光定量PCR检测了青稞籽粒4个胚乳发育时间段的B-hordein基因表达，荧光定量结果显示：两份材料中B-hordein基因的表达量均随发育过程的进行而逐渐升高。Z09中B-hordein基因在开花后7天开始转录，而Z26开花4天后就有低水平B-hordein的表达，这表明Z26中B-hordein基因可能比Z09表达的较早或者Z09中B-hordein基因表达水平较低以致于不能被检测到。此外，在4个不同的胚乳发育时期中，Z26中B-hordein基因的表达量均高于Z09材料。在开花12天到18天的过程中，Z09和Z26中B-hordein基因的表达水平有一个急剧性的升高。这说明在不同胚乳发育时期，Hor2位点的B-hordein等位基因变异体存在mRNA的差异表达。更多还原

【Abstract】 Seed endosperm storage proteins in higher plants are the main resources ofnitrogen for germinating and plant proteins for human and animals. Barley prolamins(also called hordeins) are the major storage proteins in the endosperm and account for50-60％of total proteins. Hordeins are classically divided into three groups:sulphur-rich (B,γ,-hordeins), sulphur-poor (C-hordeins) and high molecular weight(HMW, D-hordeins) hordeins based on the size and composition. B-hordeins andC-hordeins are two major groups and each respectively account for about 70-80％and10-12％of the total hordein fraction in barley endosperm. Genetic analysis showedthat B-, C-, C-,γ-hordeins are encoded by Hor2, Hor1, Hor3 and Hor5 locus on thechromosome 1H (5). Hor2 locus is rich in alleles that encode numerousheterogeneous B-hordein polypeptides. It is reported that B-hordein species, quantityand distribution are significant factors affecting malting, food and feed quality ofbarley. To understand comprehensively the structure and organization of B-hordeingene family in hull-less barley and explore the developmental control mechanisms ofHor2 locus gene expression and eventually to better exploitation in crop grainquality improvement, we isolated and cloned B-hordein genes and promotors ofhull-less barley from Qinghai-Tibet Plateau by PCR, and testified their expressionfounction in bacteria expression system and explore their spatial and temporalexpression pattern by quantitative real time PCR. Our results are as followed,1. Twenty-three copies of B-hordein gene were cloned from nine hull-less barleycultivars of Qinghai-Tibet Plateau with special B-hordein subunits and molecularlycharacterized by PCR, based on three B-hordein genes published previously(GenBank No. X03103, X53690 and X53691). DNA sequences analyses confirmedthat the six clones all contained a full-length coding region of the barley B-hordeingenes. Eleven clones all contain an in-frame stop codon and they are probablypseudogenes. The analysis of deduced amino acid sequences of the genes shows that they have similar structures including signal peptide domain, central repetitivedomain, and C-terminal domain. The number of the repeats was largerly variable andresulted in polypeptides in different sizes or structures among the genes. Twelve suchrepeated motifs were found in Z07-2 and Z26, and they are close to those of the wildbarleys, and it is most probably caused by unequal crossing-over and/or slippageduring replication as suggested for the evolution of other prolamins. The relatednessof prolamin genes of barley and wheat was assessed in the phylogenetic tree based ontheir polypeptides comparison. Our phylogenetic analysis suggested that the predictedB-hordeins of cultivated barley formed a subfamily, while the B-hordeins of wildbarleys and the two most similar sequences of LMW-GS of T. aestivum formedanother subfamily. This result indicated that the members of the two subfamilys havea distinctive difference. In addition, we found the B-hordeins with identicalC-terminal end sequences were clustered into a same subgroup (except BXQ053,BZ09-1 and BZ26-5 as a sole group, respectively), so we believe that B-hordein genesubfamilies possibly can be classified on the basis of the conserved C-terminal endsequences of predicted polypeptide and without the limit of SDS-PAGE proteinbanding patterns.2. The specific primers were designed according to the published sequences ofbarley B-hordein genes from Z09 and Z26. Using total DNA isolated from them asthe templates, eight clones (designated Z09Pand Z26P) of upstream sequences of theknown B-hordein genes was obtained by TAIL-PCR and SON-PCR. Sequencesanalysis shows that the putative TATA box was present at position -80 bp andCAAT-like box at position -140 bp. Besides, a putative Endosperm Box includingan Endo sperm Motif (EM) and a GCN4-Like Motif was found at position -300 bp insix clones, and another Endosperm-like box was found at positon -560 bp.While the Endosperm Box or Endosperm-like box was not found in Z09P-2and Z26P-3. This may indicate that gene expression drived by the two promtors wasprobably controlled by different trans-acting factors and the genetic controlmechanism of corresponding gene expression may be diverse.3. The B-hordein genic region coding for the mature peptide was cloned into expression vector pET-30a and transformed into bacterial strain BL21 for identifyinggene expression fountion. Protein SDS-PAGE analysis showed that only thetransformed lysate with the pET-BZ07-2 and pET-BZ26-5 constructs producedproteins related to B-group hordeins of barley, and the mounts of proteins induced by3 mM IPTG and 3 h were higher than other conditions. This established a base forisolating and putifying B-hordein and further exploring their effects on barley grainquality.4. The gene-specific primers of B-hordein genes from Z09 and Z26 were usedfor the quantification of B-hordein gene expression. Theα-tubulin gene fromHordeum vulgate subsp, vulgate (GenBank accession number U40042) was used as acontrol gene. The result shows the transcription of the B-hordein genes in Z09 wasfound 7 days after flowering, while the transcription of the B-hordein genes in Z26was found 4 days after flowering, but at a very low level, and it suggested that theB-hordein genes in Z26 probably expressed earlier than those in Z09, or the B-hordeingenes in Z09 expressed at so a lower level than Z26 that it can not detected. Inaddition, B-hordein genes in Z26 accession showed higher expression levels thanthose in Z09 in four developing stages. Furthermore, a progressive increase in theexpression levels of the B-hordein genes between 12 and 18 days after anthesis wasobserved in both Z09 and Z26. It implies that the B-hordein allelic variants encodedby Hor2 locus exist the differential expression in mRNA levels of during barleyendosperm development.更多还原